
Make sure to also check out his article!Īnd for people who are using WSL (windows subsystem for linux), check out Simon Kern's awesome fork of this repo here. I'm happy to point you to a nice alternative to this guide, written by Christopher Madan.

Step 11 - The Final productĪnd this is how the final product might look like: Once the file is imported, an Insert Design box. I personally used It's very easy to use, you can choose from many different materials and it gives you also the option to resize your model, as well as correct for flawed surface areas. Click on the Insert > Insert Mesh, browse your STL file, and open to import it. If you don't have access to a 3D printer, than there are many options on the internet. If you're lucky enough and you have you have your own access to a 3D printer, than you probably know what to do next. This will reduce the data volume dramatically and will make it easier to send or upload the 3D model. Now, as a final step: Export the mesh again, but this time use Binary encoding.

The next step is now to turn those subcortical regions into a 3D model. Step 5 - Create 3D Model of Subcortical Areas Mri_convert $SUBJECTS_DIR/ $/mri/aseg.mgz -colormap lutĪfter this step you'll have a NIfTI file that only contains the areas you were interested in. To print or, 3D print, that is the question. For Repetier 1.xx and newer, click the floppy disc icon on the Object Placment tab to export as either STL, OBJ or AMF. When done, click ' Save as STL ', under the Objects Placeme nt tab in Repetier. If you are working with point clouds, you must check the Keep unreferenced vertices option. Open up your objects in Repetier, then arrange them as you want. Right click one of the meshes in the Layer dialog and select Flatten visible layers. # First, convert aseg.mgz into NIfTI format You can combine several meshes as previous step to exporting.
